org.obolibrary.obo2owl

Class OboInOwlCardinalityTools

java.lang.Object

org.obolibrary.obo2owl.OboInOwlCardinalityTools

public final class OboInOwlCardinalityTools
extends Object

Tools for checking and fixing cardinality constrains for OBO ontologies in OWL.

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static interface	OboInOwlCardinalityTools.AnnotationCardinalityConfictHandler Functor for resolving conflicts for an annotation property and its cardinality constraint.
static class	OboInOwlCardinalityTools.AnnotationCardinalityException Exception indication a non-resolvable conflict for an annotation property and its cardinality constraint.
static interface	OboInOwlCardinalityTools.AnnotationCardinalityReporter Functor for reporting conflicts for an annotation property and its cardinality constraint.

Field Summary

Fields

Modifier and Type	Field and Description
static OboInOwlCardinalityTools.AnnotationCardinalityConfictHandler	DEFAULT_HANDLER Default handler.

Method Summary

Modifier and Type	Method and Description
static void	checkAnnotationCardinality(OWLOntology ontology) Check the annotations for cardinality violations.
static void	checkAnnotationCardinality(OWLOntology ontology, OboInOwlCardinalityTools.AnnotationCardinalityReporter reporter) Check the annotations for cardinality violations.
static void	checkAnnotationCardinality(OWLOntology ontology, OboInOwlCardinalityTools.AnnotationCardinalityReporter reporter, OboInOwlCardinalityTools.AnnotationCardinalityConfictHandler handler) Check the annotations for cardinality violations.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_HANDLER

public static final OboInOwlCardinalityTools.AnnotationCardinalityConfictHandler DEFAULT_HANDLER

Default handler.

Method Detail

checkAnnotationCardinality

public static void checkAnnotationCardinality(OWLOntology ontology,
                                              @Nullable
                                              OboInOwlCardinalityTools.AnnotationCardinalityReporter reporter,
                                              @Nullable
                                              OboInOwlCardinalityTools.AnnotationCardinalityConfictHandler handler)

Check the annotations for cardinality violations. Try to resolve conflicts with the given handler.

Parameters:

ontology - the target ontology

reporter - reporter

handler - the conflict handler

Throws:

OboInOwlCardinalityTools.AnnotationCardinalityException - throws exception in case a conflict cannot be resolved by the handler

See Also:

for implementation in OBO

checkAnnotationCardinality

public static void checkAnnotationCardinality(OWLOntology ontology)

Check the annotations for cardinality violations. Try to resolve conflicts with the default handler.

Parameters:

ontology - the target ontology

Throws:

OboInOwlCardinalityTools.AnnotationCardinalityException - throws exception in case a conflict cannot be resolved by the handler

See Also:

DEFAULT_HANDLER

checkAnnotationCardinality

public static void checkAnnotationCardinality(OWLOntology ontology,
                                              OboInOwlCardinalityTools.AnnotationCardinalityReporter reporter)

Check the annotations for cardinality violations. Only report violations via the given reporter

Parameters:

ontology - the target ontology

reporter - used to report violations