org.obolibrary.macro

Class MacroExpansionVisitor

java.lang.Object

org.obolibrary.macro.MacroExpansionVisitor

public class MacroExpansionVisitor
extends Object

Author:

cjm TODO - allow use of prefixes

Constructor Summary

Constructors

Constructor and Description
MacroExpansionVisitor(OWLOntology ontology)
MacroExpansionVisitor(OWLOntology ontology, boolean shouldAddExpansionMarker)
MacroExpansionVisitor(OWLOntology ontology, boolean shouldTransferAnnotations, boolean shouldAddExpansionMarker)
MacroExpansionVisitor(OWLOntology inputOntology, Set<OWLAnnotation> extraAnnotations, boolean shouldTransferAnnotations, boolean shouldAddExpansionMarker)

Method Summary

Modifier and Type	Method and Description
void	dispose() Call this method to clear internal references.
OWLOntology	expandAll()
org.obolibrary.macro.MacroExpansionVisitor.MacroExpansions	getMacroExpansions()
void	setShouldTransferAnnotations(boolean shouldTransferAnnotations)
boolean	shouldTransferAnnotations()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MacroExpansionVisitor

public MacroExpansionVisitor(OWLOntology ontology)

Parameters:

ontology - ontology to use

MacroExpansionVisitor

public MacroExpansionVisitor(OWLOntology ontology,
                             boolean shouldAddExpansionMarker)

Parameters:

ontology - ontology to use

shouldAddExpansionMarker - true if expansions should be added

MacroExpansionVisitor

public MacroExpansionVisitor(OWLOntology ontology,
                             boolean shouldTransferAnnotations,
                             boolean shouldAddExpansionMarker)

Parameters:

ontology - ontology to use

shouldTransferAnnotations - true if annotations should be transferred

shouldAddExpansionMarker - true if expansions should be added

MacroExpansionVisitor

public MacroExpansionVisitor(OWLOntology inputOntology,
                             Set<OWLAnnotation> extraAnnotations,
                             boolean shouldTransferAnnotations,
                             boolean shouldAddExpansionMarker)

Parameters:

inputOntology - input ontology

extraAnnotations - extra annotations to add

shouldTransferAnnotations - true if annotations should be transferred

shouldAddExpansionMarker - true if expansions should be added

Method Detail

getMacroExpansions

public org.obolibrary.macro.MacroExpansionVisitor.MacroExpansions getMacroExpansions()

Returns:

new MacroExpansions

expandAll

public OWLOntology expandAll()

Returns:

ontology with expanded macros

shouldTransferAnnotations

public boolean shouldTransferAnnotations()

Returns:

true if annotations should be transferred

setShouldTransferAnnotations

public void setShouldTransferAnnotations(boolean shouldTransferAnnotations)

Parameters:

shouldTransferAnnotations - new value

dispose

public void dispose()

Call this method to clear internal references.