org.obolibrary.oboformat.parser

Class XrefExpander

java.lang.Object

org.obolibrary.oboformat.parser.XrefExpander

public class XrefExpander
extends Object

xref expander

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	XrefExpander.EquivalenceExpansion equivalence expansion
class	XrefExpander.GenusDifferentiaExpansion genus diff expansion
class	XrefExpander.HasSubClassExpansion subclass expansion
class	XrefExpander.IsaExpansion is a expansion
class	XrefExpander.RelationshipExpansion relationship expansion
class	XrefExpander.ReverseGenusDifferentiaExpansion reverse genus differentia expansion
class	XrefExpander.Rule rule

Constructor Summary

Constructors

Constructor and Description
XrefExpander(OBODoc src)
XrefExpander(OBODoc src, OBODoc tgt)
XrefExpander(OBODoc src, String targetBase)

Method Summary

Modifier and Type	Method and Description
void	expandXrefs() Expand xref values.
OBODoc	getTargetDoc(String idSpace)
void	setUp()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XrefExpander

public XrefExpander(@Nonnull
                    OBODoc src)

Parameters:

src - src

Throws:

InvalidXrefMapException - InvalidXrefMapException

XrefExpander

public XrefExpander(OBODoc src,
                    String targetBase)

Parameters:

src - src

targetBase - targetBase

Throws:

InvalidXrefMapException - InvalidXrefMapException

XrefExpander

public XrefExpander(OBODoc src,
                    OBODoc tgt)

Parameters:

src - src

tgt - tgt

Throws:

InvalidXrefMapException - InvalidXrefMapException

Method Detail

setUp

public final void setUp()

Throws:

InvalidXrefMapException - InvalidXrefMapException

getTargetDoc

public OBODoc getTargetDoc(String idSpace)

Parameters:

idSpace - idSpace

Returns:

target doc

expandXrefs

public void expandXrefs()

Expand xref values.