Deprecated API

Contents

• Deprecated Interfaces
• Deprecated Classes
• Deprecated Fields
• Deprecated Methods
• Deprecated Constructors
• Deprecated Enum Constants

Deprecated Interfaces

Interface and Description
org.semanticweb.owlapi.model.OWLLogicalEntity this interface is redundant

Deprecated Classes

Class and Description
org.semanticweb.owlapi.util.DeprecatedOWLEntityCollector the old OWLEntityCollector is still used in non trivial ways in third party software. For new code, use OWLEntityCollector.
org.semanticweb.owlapi.util.NonMappingOntologyIRIMapper not useful. If no mapping is found, the code already returns the input IRI.
org.semanticweb.owlapi.util.ObjectPropertySimplifier Legal Object property expressions should always be irreducible - the standard specifies that inv : P -> PE , not PE -> PE, so inv (inv P) is an error . Versions of the OWLAPI prior to 4.1.0 did not check for this.

Deprecated Fields

Field and Description
org.semanticweb.owlapi.search.Filters.annotations use OWLAxiomIndex.getAnnotationAssertionAxioms(org.semanticweb.owlapi.model.OWLAnnotationSubject) in place of this filter as it is much faster, thanks to indexing.

Deprecated Methods

Method and Description
org.semanticweb.owlapi.model.OWLOntologyManager.addIRIMapper(OWLOntologyIRIMapper) use getIRIMappers().add() instead
org.semanticweb.owlapi.model.OWLOntologyManager.addOntologyStorer(OWLStorerFactory) use getOntologyStorers().add() instead
uk.ac.manchester.cs.owl.owlapi.OWLObjectHasValueImpl.asSomeValuesFrom()
org.semanticweb.owlapi.model.OWLOntologyManager.clearIRIMappers() use getIRIMappers().clear() instead
org.semanticweb.owlapi.model.OWLOntologyManager.clearOntologyStorers() use getOntologyStorers().clear() instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsAnnotationPropertyInSignature(IRI, boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsAnnotationPropertyInSignature(IRI, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsAxiom(OWLAxiom, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.containsAxiom(OWLAxiom, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsAxiomIgnoreAnnotations(OWLAxiom, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.containsAxiomIgnoreAnnotations(OWLAxiom, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsClassInSignature(IRI, boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsClassInSignature(IRI, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsDataPropertyInSignature(IRI, boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsDataPropertyInSignature(IRI, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsDatatypeInSignature(IRI, boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsDatatypeInSignature(IRI, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsEntityInSignature(IRI, boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsEntityInSignature(IRI, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsEntityInSignature(OWLEntity, boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsEntityInSignature(OWLEntity, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsIndividualInSignature(IRI, boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsIndividualInSignature(IRI, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsObjectPropertyInSignature(IRI, boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsObjectPropertyInSignature(IRI, boolean)
org.semanticweb.owlapi.model.OWLSignature.containsReference(OWLEntity) use HasContainsEntityInSignature.containsEntityInSignature(OWLEntity)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.containsReference(OWLEntity, boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.containsReference(OWLEntity, boolean)
org.semanticweb.owlapi.model.OWLSignature.containsReference(OWLEntity, Imports) use OWLSignature.containsEntityInSignature(OWLEntity, Imports)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAnnotationPropertiesInSignature(boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getAnnotationPropertiesInSignature(boolean)
org.semanticweb.owlapi.util.DeprecatedOWLEntityCollector.getAnonymousIndividuals()
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxiomCount(AxiomType<T>, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxiomCount(AxiomType<T>, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxiomCount(boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxiomCount(boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(AxiomType<T>, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(AxiomType<T>, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(boolean) use OWLAxiomCollection.getAxioms(org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLAnnotationProperty)
org.semanticweb.owlapi.model.OWLAxiomCollectionNoArgs.getAxioms(OWLAnnotationProperty) use OWLAxiomCollection.getAxioms(OWLAnnotationProperty, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLAnnotationProperty, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLAnnotationProperty, boolean) use OWLAxiomCollection.getAxioms(OWLAnnotationProperty, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLClass)
org.semanticweb.owlapi.model.OWLAxiomCollectionNoArgs.getAxioms(OWLClass) use OWLAxiomCollection.getAxioms(OWLClass, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLClass, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLClass, boolean) use OWLAxiomCollection.getAxioms(OWLClass, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLDataProperty)
org.semanticweb.owlapi.model.OWLAxiomCollectionNoArgs.getAxioms(OWLDataProperty) use OWLAxiomCollection.getAxioms(OWLDataProperty, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLDataProperty, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLDataProperty, boolean) use OWLAxiomCollection.getAxioms(OWLDataProperty, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLDatatype)
org.semanticweb.owlapi.model.OWLAxiomCollectionNoArgs.getAxioms(OWLDatatype) use OWLAxiomCollection.getAxioms(OWLDatatype, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLDatatype, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLDatatype, boolean) use OWLAxiomCollection.getAxioms(OWLDatatype, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLIndividual)
org.semanticweb.owlapi.model.OWLAxiomCollectionNoArgs.getAxioms(OWLIndividual) use OWLAxiomCollection.getAxioms(OWLIndividual, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLIndividual, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLIndividual, boolean) use OWLAxiomCollection.getAxioms(OWLIndividual, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLObjectPropertyExpression)
org.semanticweb.owlapi.model.OWLAxiomCollectionNoArgs.getAxioms(OWLObjectPropertyExpression) use OWLAxiomCollection.getAxioms(OWLObjectPropertyExpression, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxioms(OWLObjectPropertyExpression, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxioms(OWLObjectPropertyExpression, boolean) use OWLAxiomCollection.getAxioms(OWLObjectPropertyExpression, org.semanticweb.owlapi.model.parameters.Imports) instead
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getAxiomsIgnoreAnnotations(OWLAxiom, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getAxiomsIgnoreAnnotations(OWLAxiom, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getClassesInSignature(boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getClassesInSignature(boolean)
org.semanticweb.owlapi.rdf.turtle.parser.JavaCharStream.getColumn()
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getDataPropertiesInSignature(boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getDataPropertiesInSignature(boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getDatatypesInSignature(boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getDatatypesInSignature(boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getEntitiesInSignature(IRI, boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getEntitiesInSignature(IRI, boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getIndividualsInSignature(boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getIndividualsInSignature(boolean)
org.semanticweb.owlapi.rdf.turtle.parser.JavaCharStream.getLine()
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getLogicalAxiomCount(boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getLogicalAxiomCount(boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getLogicalAxioms(boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getLogicalAxioms(boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getObjectPropertiesInSignature(boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getObjectPropertiesInSignature(boolean)
org.semanticweb.owlapi.util.DeprecatedOWLEntityCollector.getObjects()
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getReferencedAnonymousIndividuals(boolean)
org.semanticweb.owlapi.model.OWLSignatureBooleanArgs.getReferencedAnonymousIndividuals(boolean)
uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl.getReferencingAxioms(OWLPrimitive, boolean)
org.semanticweb.owlapi.model.OWLAxiomCollectionBooleanArgs.getReferencingAxioms(OWLPrimitive, boolean)
org.semanticweb.owlapi.model.OWLObjectPropertyExpression.getSimplified() Since it is not legal to apply ObjectInverseOf to anything other than an Object Property, all object properties are always in the simplified form.
org.semanticweb.owlapi.model.OWLHasValueRestriction.getValue() use OWLHasValueRestriction.getFiller() instead
org.semanticweb.owlapi.util.mansyntax.ManchesterOWLSyntaxParser.parseClassAxiom() use ManchesterOWLSyntaxParser.parseAxiom(). ManchesterOWLSyntaxParser.parseClassAxiom() only casts the result of ManchesterOWLSyntaxParser.parseAxiom() to OWLClassAxiom.
org.semanticweb.owlapi.model.OWLOntologyManager.removeIRIMapper(OWLOntologyIRIMapper) use getIRIMappers().remove() instead
org.semanticweb.owlapi.model.OWLOntologyManager.removeOntologyStorer(OWLStorerFactory) use getOntologyStorers().remove() instead

Deprecated Constructors

Constructor and Description
org.obolibrary.oboformat.model.Clause() use Clause(String). Using this constructor makes the hashcode variable.
org.semanticweb.owlapi.util.DefaultPrefixManager(String)
org.semanticweb.owlapi.util.DeprecatedOWLEntityCollector()
org.semanticweb.owlapi.model.OWLOntologyID(IRI) use OWLOntologyID.OWLOntologyID(Optional, Optional) instead
org.semanticweb.owlapi.model.OWLOntologyID(IRI, IRI) use OWLOntologyID.OWLOntologyID(Optional, Optional) instead
uk.ac.manchester.cs.owlapi.modularity.SyntacticLocalityModuleExtractor(OWLOntologyManager, OWLOntology, Set<OWLAxiom>, ModuleType) use the constructor that takes an IRI rather than an ontology as second argument. The second argument is used only in logging assertions and can be null.

Deprecated Enum Constants

Enum Constant and Description
org.semanticweb.owlapi.vocab.SKOSVocabulary.COLLECTABLEPROPERTY No longer used
org.semanticweb.owlapi.vocab.SKOSVocabulary.COMMENT No longer used
org.semanticweb.owlapi.vocab.SKOSVocabulary.DOCUMENT No longer used
org.semanticweb.owlapi.vocab.SKOSVocabulary.IMAGE No longer used
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_ANTI_SYMMETRIC_PROPERTY
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_DATA_PROPERTY_DOMAIN
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_DATA_PROPERTY_RANGE
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_DATA_RESTRICTION
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_DECLARED_AS
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_DISJOINT_DATA_PROPERTIES
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_DISJOINT_OBJECT_PROPERTIES
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_EQUIVALENT_DATA_PROPERTIES
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_EQUIVALENT_OBJECT_PROPERTIES
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_FUNCTIONAL_DATA_PROPERTY
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_FUNCTIONAL_OBJECT_PROPERTY
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_NEGATIVE_DATA_PROPERTY_ASSERTION
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_NEGATIVE_OBJECT_PROPERTY_ASSERTION
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_OBJECT
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_OBJECT_PROPERTY_DOMAIN
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_OBJECT_PROPERTY_RANGE
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_OBJECT_RESTRICTION
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_ONTOLOGY_PROPERTY
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_PREDICATE
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_PROPERTY_CHAIN
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_SELF_RESTRICTION
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_SUB_DATA_PROPERTY_OF
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_SUB_OBJECT_PROPERTY_OF
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.OWL_SUBJECT
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.RDF_OBJECT
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.RDF_PREDICATE
org.semanticweb.owlapi.vocab.OWLRDFVocabulary.RDF_SUBJECT
org.semanticweb.owlapi.vocab.SKOSVocabulary.RESOURCE No longer used