org.obolibrary.macro

Class MacroExpansionGCIVisitor

java.lang.Object

org.obolibrary.macro.MacroExpansionGCIVisitor

public class MacroExpansionGCIVisitor
extends Object

macro expansion gci visitor

Constructor Summary

Constructors

Constructor and Description
MacroExpansionGCIVisitor(OWLOntologyManager outputManager, OWLOntology inputOntology, boolean shouldAddExpansionMarker)
MacroExpansionGCIVisitor(OWLOntology inputOntology, OWLOntologyManager outputManager, boolean preserveAnnotationsWhenExpanding)

Method Summary

Modifier and Type	Method and Description
OWLOntology	createGCIOntology()
void	dispose() Call this method to clear internal references.
void	setPreserveAnnotationsWhenExpanding(boolean preserveAnnotationsWhenExpanding)
boolean	shouldPreserveAnnotationsWhenExpanding()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MacroExpansionGCIVisitor

public MacroExpansionGCIVisitor(OWLOntology inputOntology,
                                OWLOntologyManager outputManager,
                                boolean preserveAnnotationsWhenExpanding)

Parameters:

inputOntology - input ontology

outputManager - manager for output ontology

preserveAnnotationsWhenExpanding - annotations should be preserved

MacroExpansionGCIVisitor

public MacroExpansionGCIVisitor(OWLOntologyManager outputManager,
                                OWLOntology inputOntology,
                                boolean shouldAddExpansionMarker)

Parameters:

inputOntology - input ontology

outputManager - output manager

shouldAddExpansionMarker - expansion marker should be added

Method Detail

createGCIOntology

public OWLOntology createGCIOntology()

Returns:

ontology for general concept inclusion

shouldPreserveAnnotationsWhenExpanding

public boolean shouldPreserveAnnotationsWhenExpanding()

Returns:

true if annotations should be preserved

setPreserveAnnotationsWhenExpanding

public void setPreserveAnnotationsWhenExpanding(boolean preserveAnnotationsWhenExpanding)

Parameters:

preserveAnnotationsWhenExpanding - annotations should be preserved

dispose

public void dispose()

Call this method to clear internal references.