| Package | Description | 
|---|---|
| org.obolibrary.macro | |
| org.obolibrary.obo2owl | |
| org.semanticweb.owlapi.apibinding | Binding package | 
| org.semanticweb.owlapi.change | Ontology change classes. | 
| org.semanticweb.owlapi.functional.parser | |
| org.semanticweb.owlapi.functional.renderer | |
| org.semanticweb.owlapi.latex.renderer | LaTeX syntax renderer | 
| org.semanticweb.owlapi.manchestersyntax.parser | |
| org.semanticweb.owlapi.manchestersyntax.renderer | |
| org.semanticweb.owlapi.model | Main API classes. | 
| org.semanticweb.owlapi.owlxml.renderer | |
| org.semanticweb.owlapi.profiles.violations | |
| org.semanticweb.owlapi.rdf.model | RDF model package | 
| org.semanticweb.owlapi.rdf.rdfxml.parser | |
| org.semanticweb.owlapi.search | Search utulities package | 
| org.semanticweb.owlapi.util | Utilities package | 
| org.semanticweb.owlapitools.builders | |
| uk.ac.manchester.cs.owl.owlapi | OWL API reference implementation package | 
| uk.ac.manchester.cs.owl.owlapi.concurrent | 
| Modifier and Type | Method and Description | 
|---|---|
| OWLAnnotation | AbstractMacroExpansionVisitor. getExpansionMarkerAnnotation() | 
| Modifier and Type | Method and Description | 
|---|---|
| Set<OWLAnnotation> | AbstractMacroExpansionVisitor. getAnnotationsWithOptionalExpansionMarker(OWLAxiom axiom) | 
| Constructor and Description | 
|---|
| MacroExpansionVisitor(OWLOntology inputOntology,
                     Set<OWLAnnotation> extraAnnotations,
                     boolean shouldTransferAnnotations,
                     boolean shouldAddExpansionMarker) | 
| Modifier and Type | Method and Description | 
|---|---|
| List<OWLAnnotation> | OboInOwlCardinalityTools.AnnotationCardinalityConfictHandler. handleConflict(OWLAnnotationProperty property,
              Collection<OWLAnnotation> ontologyAnnotations)Resolve a conflict for a given annotation property and ontology
 annotations. | 
| Modifier and Type | Method and Description | 
|---|---|
| List<OWLAnnotation> | OboInOwlCardinalityTools.AnnotationCardinalityConfictHandler. handleConflict(OWLAnnotationProperty property,
              Collection<OWLAnnotation> ontologyAnnotations)Resolve a conflict for a given annotation property and ontology
 annotations. | 
| void | OboInOwlCardinalityTools.AnnotationCardinalityReporter. reportConflict(OWLAnnotationProperty property,
              Collection<OWLAnnotation> ontologyAnnotations)Report a conflict for a given annotation property and ontology
 annotations. | 
| Modifier and Type | Method and Description | 
|---|---|
| static OWLAnnotation | OWLFunctionalSyntaxFactory. Annotation(OWLAnnotationProperty property,
          OWLAnnotationValue value) | 
| Modifier and Type | Method and Description | 
|---|---|
| OWLAnnotation | OntologyAnnotationChangeData. getAnnotation()Gets the  OWLAnnotationthat is the focus of someAddOntologyAnnotationchange. | 
| OWLAnnotation | OntologyAnnotationChangeData. getItem() | 
| Constructor and Description | 
|---|
| AddOntologyAnnotationData(OWLAnnotation annotation)Constructs an  AddOntologyAnnotationDataobject that describes anAddOntologyAnnotationchange for theOWLAnnotationspecified by theannotationparameter. | 
| OntologyAnnotationChangeData(OWLAnnotation annotation)Constructs an  OntologyAnnotationChangeDataobject that describes
 anAddOntologyAnnotationchange for theOWLAnnotationspecified by theannotationparameter. | 
| RemoveOntologyAnnotationData(OWLAnnotation annotation)Constructs a  RemoveOntologyAnnotationDataobject that describes aRemoveOntologyAnnotationchange for
 theOWLAnnotationspecified by theannotationparameter. | 
| Modifier and Type | Method and Description | 
|---|---|
| OWLAnnotation | OWLFunctionalSyntaxParser. Annotation() | 
| Modifier and Type | Method and Description | 
|---|---|
| Set<OWLAnnotation> | OWLFunctionalSyntaxParser. AxiomAnnotationSet() | 
| Modifier and Type | Method and Description | 
|---|---|
| void | FunctionalSyntaxObjectRenderer. visit(OWLAnnotation node) | 
| Modifier and Type | Method and Description | 
|---|---|
| void | LatexObjectVisitor. visit(OWLAnnotation node) | 
| Modifier and Type | Method and Description | 
|---|---|
| Collection<OWLAnnotation> | ManchesterOWLSyntaxOntologyHeader. getAnnotations() | 
| Constructor and Description | 
|---|
| ManchesterOWLSyntaxOntologyHeader(IRI ontologyIRI,
                                 IRI versionIRI,
                                 Set<OWLAnnotation> annotations,
                                 Set<OWLImportsDeclaration> importsDeclarations) | 
| Modifier and Type | Method and Description | 
|---|---|
| void | ManchesterOWLSyntaxObjectRenderer. visit(OWLAnnotation node) | 
| Modifier and Type | Method and Description | 
|---|---|
| OWLAnnotation | OWLAnnotation. getAnnotatedAnnotation(Set<OWLAnnotation> annotations)Gets an OWLAnnotation which is a copy of this annotation but which has
 the specified annotations. | 
| OWLAnnotation | OWLAnnotationAssertionAxiom. getAnnotation()Gets the combination of the annotation property and the annotation value
 as an  OWLAnnotationobject. | 
| OWLAnnotation | AnnotationChange. getAnnotation()Gets the annotation that was added to an ontology. | 
| OWLAnnotation | OWLDataFactory. getOWLAnnotation(OWLAnnotationProperty property,
                OWLAnnotationValue value)Gets an annotation | 
| OWLAnnotation | OWLDataFactory. getOWLAnnotation(OWLAnnotationProperty property,
                OWLAnnotationValue value,
                Set<? extends OWLAnnotation> annotations)Gets an annotation | 
| Modifier and Type | Method and Description | 
|---|---|
| Set<OWLAnnotation> | OWLOntology. getAnnotations()Gets the annotations on this ontology. | 
| Set<OWLAnnotation> | OWLAxiom. getAnnotations()Gets the annotations that are annotate this axiom. | 
| Set<OWLAnnotation> | OWLAnnotation. getAnnotations()Gets the annotations on this annotation | 
| Set<OWLAnnotation> | HasAnnotations. getAnnotations()Gets the annotations on this object. | 
| Set<OWLAnnotation> | OWLAxiom. getAnnotations(OWLAnnotationProperty annotationProperty)Gets the annotations that annotate this axiom and whose annotation property is equal to
  annotationProperty. | 
| Modifier and Type | Method and Description | 
|---|---|
| OWLAnnotationAssertionAxiom | OWLDataFactory. getOWLAnnotationAssertionAxiom(OWLAnnotationSubject subject,
                              OWLAnnotation annotation) | 
| OWLAnnotationAssertionAxiom | OWLDataFactory. getOWLAnnotationAssertionAxiom(OWLAnnotationSubject subject,
                              OWLAnnotation annotation,
                              Set<? extends OWLAnnotation> annotations) | 
| O | OWLAnnotationObjectVisitorEx. visit(OWLAnnotation node)visit OWLAnnotation type | 
| void | OWLAnnotationObjectVisitor. visit(OWLAnnotation node)visit OWLAnnotation type | 
| Constructor and Description | 
|---|
| AddOntologyAnnotation(OWLOntology ont,
                     OWLAnnotation annotation) | 
| AnnotationChange(OWLOntology ont,
                OWLAnnotation annotation) | 
| RemoveOntologyAnnotation(OWLOntology ont,
                        OWLAnnotation annotation) | 
| Modifier and Type | Method and Description | 
|---|---|
| void | OWLXMLObjectRenderer. visit(OWLAnnotation node) | 
| Constructor and Description | 
|---|
| UseOfUndeclaredAnnotationProperty(OWLOntology ontology,
                                 OWLAxiom axiom,
                                 OWLAnnotation annotation,
                                 OWLAnnotationProperty prop) | 
| Modifier and Type | Method and Description | 
|---|---|
| void | AbstractTranslator. visit(OWLAnnotation node) | 
| Modifier and Type | Method and Description | 
|---|---|
| Set<OWLAnnotation> | OWLRDFConsumer. getPendingAnnotations()Gets any annotations that were translated since the last call of this method (calling this
 method clears the current pending annotations). | 
| Set<OWLAnnotation> | OWLRDFConsumer. translateAnnotations(IRI mainNode)Translates the annotation on a main node. | 
| Modifier and Type | Method and Description | 
|---|---|
| static OWLAnnotation | Searcher. annotationObject(OWLAnnotationAssertionAxiom axiom,
                OWLAnnotationProperty p)Retrieve the annotation from an annotation assertion axiom. | 
| Modifier and Type | Method and Description | 
|---|---|
| static Collection<OWLAnnotation> | Searcher. annotationObjects(Collection<OWLAnnotationAssertionAxiom> axioms)Retrieve annotations from a collection of annotation assertion axioms. | 
| static Collection<OWLAnnotation> | Searcher. annotationObjects(Collection<OWLAnnotationAssertionAxiom> axioms,
                 OWLAnnotationProperty p)Retrieve annotations from a collection of annotation assertion axioms. | 
| static Collection<OWLAnnotation> | Searcher. annotations(Collection<? extends OWLAxiom> axioms)Retrieve annotations from a collection of axioms. | 
| static Collection<OWLAnnotation> | Searcher. annotations(Collection<? extends OWLAxiom> axioms,
           OWLAnnotationProperty p)Retrieve annotations from a collection of axioms. | 
| static Set<OWLAnnotation> | Searcher. annotations(OWLAxiom axiom,
           OWLAnnotationProperty p)Retrieve annotations from an axiom. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotationObjects(OWLAnnotationSubject e,
                    Iterable<OWLOntology> ontologies,
                    OWLAnnotationProperty annotationProperty)Obtains the annotations on e where the annotation has the specified annotation property; this
 is restricted to the object of annotation assertion axioms. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotationObjects(OWLAnnotationSubject e,
                    OWLOntology ontology,
                    OWLAnnotationProperty annotationProperty)Obtains the annotations on e where the annotation has the specified annotation property; this
 is restricted to the object of annotation assertion axioms. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotationObjects(OWLEntity e,
                    Iterable<OWLOntology> ontologies)Obtains the annotations on e; this is restricted to the object of annotation assertion
 axioms. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotationObjects(OWLEntity e,
                    Iterable<OWLOntology> ontologies,
                    OWLAnnotationProperty annotationProperty)Obtains the annotations on e where the annotation has the specified annotation property; this
 is restricted to the object of annotation assertion axioms. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotationObjects(OWLEntity e,
                    OWLOntology ontology)Obtains the annotations on e; this is restricted to the object of annotation assertion
 axioms. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotationObjects(OWLEntity e,
                    OWLOntology ontology,
                    OWLAnnotationProperty annotationProperty)Obtains the annotations on e where the annotation has the specified annotation property; this
 is restricted to the object of annotation assertion axioms. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotations(OWLAnnotationSubject e,
              Iterable<OWLOntology> ontologies,
              OWLAnnotationProperty annotationProperty)Obtains the annotations on e where the annotation has the specified annotation property. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotations(OWLAnnotationSubject e,
              OWLOntology ontology)Gets the annotations for e. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotations(OWLAnnotationSubject e,
              OWLOntology ontology,
              OWLAnnotationProperty annotationProperty)Obtains the annotations on e where the annotation has the specified annotation property. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotations(OWLEntity e,
              Iterable<OWLOntology> ontologies,
              OWLAnnotationProperty annotationProperty)Obtains the annotations on e where the annotation has the specified annotation property. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotations(OWLEntity e,
              OWLOntology ontology)Gets the annotations for e. | 
| static Collection<OWLAnnotation> | EntitySearcher. getAnnotations(OWLEntity e,
              OWLOntology ontology,
              OWLAnnotationProperty annotationProperty)Obtains the annotations on e where the annotation has the specified annotation property. | 
| Modifier and Type | Method and Description | 
|---|---|
| static Collection<OWLAnnotationValue> | Searcher. values(Collection<OWLAnnotation> annotations)Retrieve annotation values from annotations | 
| static Collection<OWLAnnotationValue> | Searcher. values(Collection<OWLAnnotation> annotations,
      OWLAnnotationProperty p)Retrieve annotation values from annotations | 
| Modifier and Type | Method and Description | 
|---|---|
| OWLAnnotation | OWLObjectWalker. getAnnotation()Gets the last annotation to be visited. | 
| OWLAnnotation | OWLOntologyWalkerVisitorEx. getCurrentAnnotation() | 
| OWLAnnotation | OWLOntologyWalkerVisitor. getCurrentAnnotation() | 
| OWLAnnotation | OWLObjectDesharer. visit(OWLAnnotation node) | 
| Modifier and Type | Method and Description | 
|---|---|
| void | OWLObjectWalker. setAnnotation(OWLAnnotation node)Allow the structure walker to set the current annotation | 
| void | StructureWalker. visit(OWLAnnotation node) | 
| void | SimpleRendererDebug. visit(OWLAnnotation node) | 
| void | SimpleRenderer. visit(OWLAnnotation node) | 
| O | OWLObjectVisitorExAdapter. visit(OWLAnnotation node) | 
| void | OWLObjectVisitorAdapter. visit(OWLAnnotation node) | 
| void | OWLObjectTypeIndexProvider. visit(OWLAnnotation node) | 
| void | OWLObjectDuplicator. visit(OWLAnnotation node) | 
| OWLAnnotation | OWLObjectDesharer. visit(OWLAnnotation node) | 
| void | OWLObjectComponentCollector. visit(OWLAnnotation node) | 
| Collection<OWLEntity> | OWLEntityCollector. visit(OWLAnnotation node) | 
| void | OWLAnonymousIndividualsWithMultipleOccurrences. visit(OWLAnnotation annotation) | 
| void | OWLAnnotationPropertyTransformer. visit(OWLAnnotation node) | 
| void | HashCode. visit(OWLAnnotation node) | 
| void | DeprecatedOWLEntityCollector. visit(OWLAnnotation annotation)Deprecated.  | 
| O | DelegatingObjectVisitorEx. visit(OWLAnnotation node) | 
| Modifier and Type | Method and Description | 
|---|---|
| OWLAnnotation | BuilderAnnotation. buildObject() | 
| Modifier and Type | Method and Description | 
|---|---|
| B | BaseBuilder. withAnnotation(OWLAnnotation arg) | 
| Modifier and Type | Method and Description | 
|---|---|
| B | BaseBuilder. withAnnotations(Collection<OWLAnnotation> arg) | 
| Constructor and Description | 
|---|
| BuilderAnnotation(OWLAnnotation expected,
                 OWLDataFactory df)builder initialized from an existing object | 
| Modifier and Type | Class and Description | 
|---|---|
| class  | OWLAnnotationImpl | 
| Modifier and Type | Method and Description | 
|---|---|
| Set<OWLAnnotation> | OWLImmutableOntologyImpl. getAnnotations() | 
| Set<OWLAnnotation> | OWLAxiomImplWithoutEntityAndAnonCaching. getAnnotations() | 
| Set<OWLAnnotation> | OWLAxiomImplWithEntityAndAnonCaching. getAnnotations() | 
| Set<OWLAnnotation> | OWLAnnotationImpl. getAnnotations() | 
| Set<OWLAnnotation> | OWLAxiomImplWithoutEntityAndAnonCaching. getAnnotations(OWLAnnotationProperty annotationProperty) | 
| Set<OWLAnnotation> | OWLAxiomImplWithEntityAndAnonCaching. getAnnotations(OWLAnnotationProperty annotationProperty) | 
| Modifier and Type | Method and Description | 
|---|---|
| boolean | Internals. addOntologyAnnotation(OWLAnnotation ann) | 
| OWLAnnotationAssertionAxiom | OWLDataFactoryImpl. getOWLAnnotationAssertionAxiom(OWLAnnotationSubject subject,
                              OWLAnnotation annotation) | 
| OWLAnnotationAssertionAxiom | OWLDataFactoryImpl. getOWLAnnotationAssertionAxiom(OWLAnnotationSubject subject,
                              OWLAnnotation annotation,
                              Set<? extends OWLAnnotation> annotations) | 
| boolean | Internals. removeOntologyAnnotation(OWLAnnotation ann) | 
| void | AbstractEntityRegistrationManager. visit(OWLAnnotation node) | 
| Modifier and Type | Method and Description | 
|---|---|
| Set<OWLAnnotation> | ConcurrentOWLOntologyImpl. getAnnotations() | 
Copyright © 2020 The University of Manchester. All rights reserved.