org.obolibrary.oboformat.writer

Class OBOFormatWriter.OWLOntologyNameProvider

java.lang.Object

org.obolibrary.oboformat.writer.OBOFormatWriter.OWLOntologyNameProvider

All Implemented Interfaces:

OBOFormatWriter.NameProvider

Enclosing class:

OBOFormatWriter

public static class OBOFormatWriter.OWLOntologyNameProvider
extends Object
implements OBOFormatWriter.NameProvider

Alternative implementation to lookup labels in an OWLOntology.
This implementation might be a bit slower as it involves additional id conversion back into OWL.

Constructor Summary

Constructors

Constructor and Description
OWLOntologyNameProvider(OWLOntology ont, String defaultOboNamespace, OBODoc result)

Method Summary

Modifier and Type	Method and Description
String	getDefaultOboNamespace() Retrieve the default OBO namespace.
String	getName(String id) Try to retrieve the valid name for the given identifier.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OWLOntologyNameProvider

public OWLOntologyNameProvider(@Nonnull
                               OWLOntology ont,
                               String defaultOboNamespace,
                               OBODoc result)

Parameters:

ont - ontology

defaultOboNamespace - default OBO namespace

result - result

Method Detail

getName

public String getName(String id)

Description copied from interface: OBOFormatWriter.NameProvider

Try to retrieve the valid name for the given identifier. If not available return null.

Specified by:

getName in interface OBOFormatWriter.NameProvider

Parameters:

id - identifier

Returns:

name or null

getDefaultOboNamespace

public String getDefaultOboNamespace()

Description copied from interface: OBOFormatWriter.NameProvider

Retrieve the default OBO namespace.

Specified by:

getDefaultOboNamespace in interface OBOFormatWriter.NameProvider

Returns:

default OBO namespace or null